- Uploading data sftp mac command line how to#
- Uploading data sftp mac command line password#
- Uploading data sftp mac command line zip#
- Uploading data sftp mac command line download#
Uploading data sftp mac command line password#
Unlike SFTP, Bioshare cannot use your username and password to authenticate you. Rsync is, however, the least simple transfer method to setup. In this way, rsync will only transfer the files that have been changed, which is important if regularly updating large datasets. Additionally, rsync is able to identify which files have already been transfered, and if the source has been updated since. "Rsync is an open source utility that provides fast incremental file transfer." In other words, this is probably the most efficient option for transfering data.
Uploading data sftp mac command line how to#
For more details on how to use sftp on the linux or mac command line, see the manual. For uploading files, use "put /local/path/to/file" or for a directory "put -r /local/path/to/directory". If it is a directory, use "get -r DIRECTORY_NAME".
To change into a directory, use "cd DIRECTORY_NAME". If the share has a "friendly URL", it will be listed by that instead of the random directory. Sftp -P 2200 view a list of shares, use the "ls" command. Connecting using sftp is quite simple, and will look something like (depending on port number, username, etc): You can simply drag and drop files or directories between Bioshare and your local machine.Īgain, this is a useful option when trying to transfer files to/from a remote server. After successful authentication, you'll have a list of all of your available shares on the right side of the window. Once entered, click "Quickconnect" and you should see some details below as FileZilla attempt to log in. Here, you need to enter the host (ie: s), username (same as you log into Bioshare with), password (again, same as you log in with), and port (depends on how Bioshare was configured). The simplest way to connect to Bioshare using FileZilla is simply by using the "Quickconnect" parameters at the top of the window. There are plenty of other options as well, such as Cyberduck, but not all support all platforms. Using FileZillaĪs far as graphical applications that support SFTP go, I often suggest FileZilla, as it is free, open source, and available on Windows, Mac, and Linux. Bioshare supports both downloads and uploads using SFTP. It is available on most any operating system either as a GUI, or as a command line application. SFTP is something of a cross platform standard for secure file transfer. A much more efficient method is to log in to the server where I want to store the data, then using command line tools (rsync, SFTP, wget), transfer the data directly. This is both inefficient and time consuming.
Uploading data sftp mac command line download#
If for example, I am browsing files on Bioshare using my laptop, but I ultimately want them available on my computing cluster, I would first need to download the files to my laptop, and then upload them from my laptop to the cluster. In these cases, tools like rsync, SFTP, or wget prove to be useful.Īnother scenario where using the browser is impractical is when trying to transfer to or from another server. It can be difficult or time consuming to know where to things back up. For large or numerous files, browsers do not handle failure well. There are, however, times where transfering files using the browser is undesirable. Uploads are simple as well, using the same mechanisms that most web applications use for selecting files to upload.
Uploading data sftp mac command line zip#
Here, files can simply be downloaded by clicking on a link, or by selecting a list of files and directories and downloading them as a zip file. The simplest is generally by using the browser. There are multiple ways to download or upload files within Bioshare.
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